FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486433

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486433
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18374514
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGATCTA1761270895.85400734952772No Hit
NGGATCTA3568261.941961566983486No Hit
AGGCTCTA389070.2117443759328818No Hit
AGGATCTC302630.16470095481164834No Hit
AGGTTCTA299380.1629322005469097No Hit
CGGATCTA290220.157947034680754No Hit
AGGGTCTA274990.14965838008014798No Hit
AGGAGCTA265850.14468409885562145No Hit
AGGATGTA253940.13820229476545612No Hit
ANGATCTA225900.12294202720137251No Hit
AGGATCAA188770.10273469001683527No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)