FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486436

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486436
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20109834
Sequences flagged as poor quality0
Sequence length151
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTACGCG13700.085.723549
TGCGCGA29650.079.153221
TTTGCGC33600.073.329531
ACGACCG29700.072.373431
CGCCGAA34050.071.0721051
CGGTACG29150.069.725971
TTACCCG39600.065.542271
GTGCGAC35450.064.965471
CGAACTA44400.064.549281
GCGCTAG34800.064.288081
GGCGACT38200.064.116491
CGACACG39750.063.0877841
TCCGCGA29750.062.6255878
GTTACGC33850.062.535968
TCGTACG41050.062.516668
ACGCCGA43800.061.9281461
CGAACGC38500.061.7178651
GTACGCT29050.061.6391268
TAGGCGC37550.061.526961
ATAGCGT43550.061.276361
Produced by FastQC (version 0.11.5)