FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486438

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486438
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19534355
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATCCT1879872296.23415771854253No Hit
NACATCCT3376511.72849833024945No Hit
CACATCCA608860.3116867692841663No Hit
CCCATCCT376620.19279878961962144No Hit
CACCTCCT234880.12023944481402125No Hit
CACAGCCT231130.11831974999942409No Hit
CACATCCC197180.10094011294460453No Hit
CNCATCCT197100.10089915945522646No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)