FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005486439

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486439
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19335526
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATCCT1854214195.89674984792242No Hit
NACATCCT3550791.8364072433302305No Hit
CACATCCA599700.3101544793764597No Hit
CCCATCCT424470.21952855071023153No Hit
CACCTCCT237260.12270677301460535No Hit
CGCATCCT236450.12228785500844404No Hit
CACAGCCT228220.11803144119275576No Hit
CAGATCCT227250.1175297739508095No Hit
CACATCCC205040.10604314565841136No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)