FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486441

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486441
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15717008
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCGCTGA1515314496.4123960489172No Hit
NTCGCTGA2550091.6225034688536137No Hit
TTCGCTGC451710.28740202969929135No Hit
TTCGCTAA295220.18783473292117686No Hit
TTCGCTGT248510.1581153359468927No Hit
TTCGCTGG248300.15798172272992417No Hit
GTCGCTGA205390.13068008872935613No Hit
TTCGCTTA166040.10564351688311159No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)