FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486458

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486458
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15922281
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCGCTGA1532175596.22839215059702No Hit
NTCGCTGA2289011.437614371960902No Hit
TTCGCTGC496960.3121160843725846No Hit
TTCGCTAA340080.21358748787312573No Hit
TTCGCTGG308900.19400486651378657No Hit
TTCGCTGT253860.1594369550443181No Hit
GTCGCTGA244590.15361492489675319No Hit
TTCGCTTA174500.10959485013485191No Hit
TTTGCTGA167070.10492843330676051No Hit
TTGGCTGA159970.10046927321531382No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)