FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005486459

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486459
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18745478
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCAATTC1800070796.02692980141664No Hit
NGCAATTC3639361.9414602284348257No Hit
AGCACTTC503580.26864078899455107No Hit
AGCAATTA369840.1972955824332674No Hit
AGCAGTTC245950.13120497647485968No Hit
ANCAATTC235370.12556094861918166No Hit
AGCATTTC235240.1254915985604635No Hit
CGCAATTC219230.11695087209832686No Hit
AGCAATTT204020.108836915228302No Hit
AGCAATCC194220.10360898772493292No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)