FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486462

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486462
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18745478
Sequences flagged as poor quality0
Sequence length151
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTTGCGC29700.078.822241
ACGACCG28200.078.0859151
TGCGCGA26850.077.925041
TTACGCG11550.077.201449
CGCCGAA29100.075.670881
GTGCGAC34100.075.087721
CGGTACG28700.069.588271
GACGCGT29250.069.280211
GCGCTAG33050.068.1764761
TAGGCGC35100.068.154721
CGAACGC34800.068.1115951
ATAACGC36150.066.3774951
CCGCTAT39100.065.672821
AACGCGT25600.063.998983
TCGTACG36200.062.6813058
CCTTACG37000.062.2822231
GCGCGTA30900.062.266231
TTACCCG36800.062.223131
TCGACGG32750.062.0995941
GCCGGAT38300.062.078311
Produced by FastQC (version 0.11.5)