FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486467

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486467
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15757083
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCGCTGA1516919896.26907467581405No Hit
NTCGCTGA2693661.7094915346958572No Hit
TTCGCTGC437580.2777036841146296No Hit
TTCGCTAA307030.194852054787044No Hit
TTCGCTGG247760.15723722468175105No Hit
TTCGCTGT243700.15466060564636233No Hit
GTCGCTGA190800.12108840195866202No Hit
TTCGCTTA175650.11147367821823367No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)