FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486476

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486476
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19469384
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGCGA1856596395.35978642159402No Hit
NATAGCGA3729751.915700055019717No Hit
CATAGCGC595110.30566452436296904No Hit
CATAGCGT412670.21195842662510536No Hit
CATCGCGA322140.16545978034025113No Hit
CGTAGCGA321840.16530569226021738No Hit
CATAGCGG294570.1512990857851486No Hit
CATGGCGA282400.14504824600511243No Hit
CATAGCAA281060.14435998591429497No Hit
CATTGCGA276140.1418329414017413No Hit
CCTAGCGA274070.14076973364950837No Hit
CAGAGCGA236760.12160631276264314No Hit
CATAGCTA223320.1147031667771307No Hit
TATAGCGA203010.10427140375884517No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)