FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486477

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486477
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20264177
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGCGA1947867496.12368664170275No Hit
NATAGCGA3690241.82106581481202No Hit
CATAGCGC525450.25929994590947364No Hit
CNTAGCGA339610.16759131150502685No Hit
CATAGCGT319290.1575637638775066No Hit
CATCGCGA257420.12703205267107565No Hit
CATAGCGG255620.12614378565682682No Hit
CCTAGCGA235500.11621493436422313No Hit
CATAGCAA226870.11195618751257454No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)