FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005486478

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486478
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19304895
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGCGA1860107396.35417856455578No Hit
NATAGCGA3077671.594243325332772No Hit
CATAGCGC566210.2932986685501268No Hit
CATAGCGT340440.17634905551156846No Hit
CATAGCGG275850.14289122007656607No Hit
CATCGCGA260720.1350538296116089No Hit
CATAGCAA215480.11161935871705078No Hit
CCTAGCGA215170.1114587776830695No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)