FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486481

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486481
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20302912
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATCCT1959442896.51043160705223No Hit
NACATCCT2092971.0308718276471867No Hit
CACATCCA711500.3504423404879064No Hit
CNCATCCT432060.21280691163907917No Hit
CCCATCCT371030.18274718424627956No Hit
CACAGCCT351450.1731032474553404No Hit
CGCATCCT295210.14540278754101874No Hit
CACATGCT259960.1280407460762279No Hit
CACATCCG223520.110092581793193No Hit
TACATCCT216050.10641330662320755No Hit
GACATCCT213730.10527061339772342No Hit
CACCTCCT210280.10357134976499924No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)