FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486486

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486486
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16634914
Sequences flagged as poor quality0
Sequence length151
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTTGCGC26750.080.797711
TGCGCGA27400.080.213421
TTACGCG11700.079.319
CGCCGAA26450.075.916841
CGGTACG26000.073.2990341
ACGACCG23200.071.444531
GTGCGAC27650.071.037591
CGAACGC29850.068.982011
GCGCGTA26500.068.885091
CCGCTAT32600.068.090581
GCGCTAG28550.068.030971
ATAACGC31500.066.064091
TTACCCG32300.066.010261
GTTCGCG36450.065.8321848
GACGCGT27700.064.055671
CGTTGCG13650.063.731837
TCGTACG33050.063.6113058
TAGGCGC32200.062.813791
CGATCGG29700.062.2006871
GCCGGAT33050.062.082041
Produced by FastQC (version 0.11.5)