FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486488

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486488
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19108633
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCAATTC1840543196.31997746777596No Hit
NGCAATTC1938611.0145205049466386No Hit
AGCAAGTC545830.28564576021738447No Hit
AGCACTTC390310.20425846265402658No Hit
AGCAATTA389360.20376130516505286No Hit
AGCAGTTC384500.20121795211619797No Hit
AGCAATGC304350.1592735597569957No Hit
AGGAATTC274670.14374131315411207No Hit
AGCAATTT231520.12115989668125397No Hit
AGCAACTC227040.1188154066279885No Hit
AGCATTTC223090.11674827812120313No Hit
AGCAATCC217510.11382813202807339No Hit
GGCAATTC208020.10886179037506241No Hit
CGCAATTC202320.1058788454412202No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)