FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005486491

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486491
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19387427
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCAATTC1873379096.62855210234963No Hit
NGCAATTC2018601.041190251805977No Hit
ANCAATTC408420.21066230191350302No Hit
AGCAATTA398270.20542695015692386No Hit
AGCACTTC388720.2005010773219159No Hit
AGCAGTTC314890.16241969602258205No Hit
AGCAAGTC272640.14062722196194472No Hit
AGCAATGC254160.13109527117755232No Hit
CGCAATTC220930.1139552969045351No Hit
AGCATTTC210070.1083537284240967No Hit
GGCAATTC207750.10715707659402146No Hit
AGCAATTT207210.10687854556460741No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)