FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005486494

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486494
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19032986
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCAATTC1843789296.87335450149546No Hit
NGCAATTC1430770.751731756646067No Hit
AGCAATTA514580.27036220170602765No Hit
AGCACTTC389130.20445031588842655No Hit
AGCAATTG341280.17930975202734872No Hit
AGCAGTTC304120.15978575300796208No Hit
AGCAAGTC303550.15948627293688966No Hit
AGCAATTT281360.14782756631040447No Hit
AGCAATGC270900.14233184430440918No Hit
AGCATTTC201910.10608424763197954No Hit
AGCAATCC197470.10375145549941558No Hit
CGCAATTC195500.1027164103414987No Hit
AGCCATTC192790.10129256649482116No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)