FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005486495

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486495
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19123270
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCAATTC1849728596.72657971152422No Hit
NGCAATTC1912641.0001636749363472No Hit
AGCAATTA391800.20488127814960516No Hit
AGCACTTC386490.20210455638601554No Hit
AGCAAGTC342730.1792214406845691No Hit
AGCAGTTC315900.16519141339321153No Hit
AGCAATGC248700.13005097977490251No Hit
AGCAATTT219590.11482868777149514No Hit
CGCAATTC217380.11367302767779777No Hit
AGCATTTC211390.11054071819307054No Hit
ANCAATTC206380.10792087336527698No Hit
GGCAATTC203680.10650898094311276No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)