FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486502

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486502
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23026824
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTGAGCCT2224866696.62064555667772No Hit
NTGAGCCT1795210.7796168503307274No Hit
TTGGGCCT519110.22543708155323547No Hit
GTGAGCCT511530.22214526849208557No Hit
TGGAGCCT426810.185353394805988No Hit
TTGAGCCG415220.1803201344657865No Hit
TTTAGCCT387500.1682820001577291No Hit
TTGCGCCT387130.16812131798983654No Hit
TTGAGGCT350290.1521225853812927No Hit
TTGAGCCA306160.13295797978913637No Hit
TTGAGCCC302340.13129904497467823No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)