FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486507

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486507
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22528859
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTGAGCCT2176066796.59018683547178No Hit
NTGAGCCT2568461.1400754916172187No Hit
GTGAGCCT409800.18190002431991786No Hit
TNGAGCCT373100.16560980740302916No Hit
TTGCGCCT349740.15524088459162533No Hit
TTGGGCCT335220.14879581784412607No Hit
TTTAGCCT332620.14764174253121298No Hit
TTGAGCCG316550.14050866934716932No Hit
TGGAGCCT302910.1344542127055791No Hit
TTGAGCCC262870.11668145288671744No Hit
TTGATCCT254760.11308162566066927No Hit
TTGAGCCA233720.10374249312848022No Hit
TTGAGGCT232140.10304117043832535No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)