FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486508

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486508
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22323286
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTGAGCCT2142375995.97045434977628No Hit
NTGAGCCT2337721.0472114186056658No Hit
TTGAGCCG684530.3066439233005392No Hit
GTGAGCCT579690.2596795113407587No Hit
TNGAGCCT480610.21529536466987878No Hit
TGGAGCCT439060.19668251349734084No Hit
TTGCGCCT395690.1772543701675461No Hit
TTGGGCCT369970.16573276891224706No Hit
TTGAGCCC352050.15770527690233418No Hit
TTTAGCCT335890.15046619928625202No Hit
TTGAGCCA313370.14037807874700883No Hit
ATGAGCCT301510.13506524084312677No Hit
TTGATCCT278630.12481585372332729No Hit
TTGAGGCT255590.11449479256772502No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)