FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486509

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486509
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19874285
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AACTTGAC1925458496.88189537384615No Hit
NACTTGAC2075891.044510532077003No Hit
ANCTTGAC424320.2135020203242532No Hit
CACTTGAC349200.17570443414693912No Hit
GACTTGAC330990.1665418403731254No Hit
AGCTTGAC313640.1578119665688602No Hit
AACTTGCC310090.15602573878758405No Hit
TACTTGAC260520.13108396100790543No Hit
ACCTTGAC237650.11957662879444467No Hit
AACTTGGC236690.11909359254936719No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)