FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005486510

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486510
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16878178
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCGCTGA1634360696.83276239887978No Hit
NTCGCTGA1761101.0434183120950613No Hit
TNCGCTGA359420.21294952571302422No Hit
TTCGCTAA324860.19247338190176688No Hit
TTCGCTGC315780.18709365430320737No Hit
GTCGCTGA287720.17046863707682192No Hit
TTCGCTGG278280.1648756163135618No Hit
TTCGCGGA204830.12135788590450935No Hit
TTCGCTGT176390.10450772589316218No Hit
TTCGCTTA171470.10159271930892068No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)