FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486511

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486511
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17160893
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCGCTGA1659160696.68264932366864No Hit
NTCGCTGA1337330.7792892829061984No Hit
TTCGCTGG359920.20973267533338735No Hit
GTCGCTGA357600.2083807643343502No Hit
TTCGCTGC355730.20729107745150557No Hit
TTCGCTAA328490.19141777761798293No Hit
TTCGCGGA292440.17041071230966826No Hit
TTGGCTGA260210.15162963838769927No Hit
TTCGGTGA218640.1274059572540893No Hit
TGCGCTGA207720.12104265203448329No Hit
TTCGCTGT201460.11739482321811576No Hit
TTCGCTTA186770.10883466262507435No Hit
TTTGCTGA184240.10736038037181397No Hit
TTCTCTGA182270.1062124214631488No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)