FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005486515

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486515
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17973784
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATGCTTA1737413596.66375761497969No Hit
NATGCTTA1889711.0513701511045197No Hit
CATGCTAA413390.22999608763519136No Hit
CNTGCTTA386500.2150354093495282No Hit
CATGCGTA302090.16807256613298568No Hit
CCTGCTTA235450.13099634445367764No Hit
CAGGCTTA222870.12399726178972663No Hit
CGTGCTTA221990.12350765982277298No Hit
TATGCTTA207740.11557944615335314No Hit
CATGCTTC205790.11449453270385357No Hit
GATGCTTA190240.10584304340143401No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)