FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005486520

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486520
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20582470
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGCGA1987512096.56333763634782No Hit
NATAGCGA1979430.9617067339342654No Hit
CATAGCGC444650.21603335265398177No Hit
CATAGCGG347040.1686095011920338No Hit
CATGGCGA328860.15977674205282455No Hit
CAGAGCGA319060.15501540874345984No Hit
GATAGCGA298630.1450894863444475No Hit
CATAGCGT294430.14304891492614832No Hit
TATAGCGA285560.13873942243083556No Hit
CATCGCGA282300.13715555032996526No Hit
CCTAGCGA240800.11699276131581875No Hit
CATAGCAA237830.11554978581287863No Hit
AATAGCGA225780.10969528924371079No Hit
CGTAGCGA225490.10955439264578061No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)