FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005486521

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486521
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20991188
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGCGA2031104396.75985465901216No Hit
NATAGCGA2181751.0393647086577473No Hit
CNTAGCGA449760.2142613367094802No Hit
CATAGCGC401960.19148987660917524No Hit
CATAGCGG321320.15307375647343066No Hit
CATAGCGT257620.12272768935231299No Hit
CATCGCGA257320.12258477223871272No Hit
CATAGCAA244410.11643457245011574No Hit
CCTAGCGA242960.1157438064010479No Hit
CGTAGCGA240430.11453853874301921No Hit
TATAGCGA210700.1003754527852354No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)