FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486522

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486522
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17751579
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATGCTTA1699386795.73157970905011No Hit
NATGCTTA1861911.0488700751634545No Hit
CAGGCTTA448060.252405715570429No Hit
CATGCTTG441680.2488116690915214No Hit
CATGCTAA398490.22448143908775664No Hit
CNTGCTTA388340.21876363787131275No Hit
CATGGTTA367740.20715903638769262No Hit
GATGCTTA350610.19750919059087646No Hit
CGTGCTTA327150.1842934648236081No Hit
TATGCTTA308110.1735676584037961No Hit
CATGCGTA306880.17287476229579352No Hit
CCTGCTTA269220.15165974812719477No Hit
CATGCTTC259330.1460884127547189No Hit
AATGCTTA232570.13101369742939487No Hit
CATGCTTT225390.12696898681520105No Hit
CACGCTTA194350.10948321836609577No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)