FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486523

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486523
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21076192
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCGGAT2030981296.36376438400256No Hit
NGTCGGAT2146341.0183718197291047No Hit
TGGCGGAT636800.3021418669938099No Hit
TGTCGGGT613180.2909349089247241No Hit
TGTCGGCT555120.26338723807412645No Hit
TGCCGGAT404260.19180884288774747No Hit
TGTCGGAG351150.16660979364773296No Hit
TGTCGGAA251070.11912493490285152No Hit
GGTCGGAT231680.10992498075553686No Hit
TGTCGGTT230270.10925597944827985No Hit
TGACGGAT213570.10133234694388817No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)