FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005486525

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486525
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18847963
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGATCTA1814663896.27904087035824No Hit
NGGATCTA1817420.9642527417949621No Hit
AGGAGCTA496070.26319555062793787No Hit
AGGGTCTA470060.24939565087219237No Hit
GGGATCTA359190.19057231808020844No Hit
AGGCTCTA346170.18366440978263807No Hit
CGGATCTA322980.17136069293005296No Hit
AGGATCTC315050.1671533417165558No Hit
AGGATGTA312900.16601263489322426No Hit
AGGTTCTA287830.1527114627718656No Hit
TGGATCTA260310.13811041543322214No Hit
AGGATCTT202910.10765619605683649No Hit
AGGATCAA199080.10562414622736685No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)