FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486526

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486526
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18767523
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGATCTA1815168096.71857069257355No Hit
NGGATCTA1405810.7490652868788279No Hit
AGGAGCTA434470.23150098177580494No Hit
AGGATCTG363440.19365368567817925No Hit
AGGATCTC361890.19282779085977408No Hit
AGGGTCTA353160.18817613810836945No Hit
AGGCTCTA322990.17210049509463768No Hit
AGGATGTA316120.16843991612531925No Hit
AGGATCTT248630.13247885722585767No Hit
CGGATCTA243060.12951096423326616No Hit
AGGTTCTA242190.12904739746422583No Hit
GGGATCTA214370.11422391756226967No Hit
AGGATCAA201250.10723311755099488No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)