FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486531

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486531
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18820470
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGATCTA1817084296.54829023929796No Hit
NGGATCTA1885111.0016274832668897No Hit
AGGAGCTA423870.22521754238868635No Hit
AGGATGTA341930.18167984115168218No Hit
AGGGTCTA341790.18160545406145542No Hit
AGGCTCTA302030.16047952043705604No Hit
AGGATCTC281650.14965088544547506No Hit
CGGATCTA277950.1476849409180536No Hit
GGGATCTA259010.1376214302830907No Hit
AGGTTCTA236400.12560791521146922No Hit
TGGATCTA220500.11715966710714451No Hit
ANGATCTA205610.10924806872516998No Hit
AGGATCAA200310.10643198602372841No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)