FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486538

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486538
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17679086
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATGCTTA1713954496.94813408340227No Hit
NATGCTTA1343270.7598073791823854No Hit
CATGCTAA404580.22884667227706226No Hit
CATGCTTG356810.2018260446269677No Hit
CATGCGTA327930.18549035849477738No Hit
CATGCTTC272680.1542387428852374No Hit
CAGGCTTA265340.1500869445400062No Hit
CCTGCTTA223000.12613774264122027No Hit
CATGCTTT222170.12566826135695022No Hit
CGTGCTTA211570.11967247628073081No Hit
TATGCTTA206220.11664630173754456No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)