FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486540

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486540
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17745755
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATGCTTA1709854496.35286861562103No Hit
NATGCTTA1802861.0159387414060432No Hit
CATGCGTA555210.3128691904063817No Hit
CATGCTAA418030.23556619597193806No Hit
CAGGCTTA363730.20496732880624124No Hit
TATGCTTA244360.1377005373961266No Hit
CATGCCTA230310.12978315095638365No Hit
CCTGCTTA229300.12921400075680073No Hit
CGTGCTTA215640.12151638518620368No Hit
CATGCTTC207090.1166983315164669No Hit
GATGCTTA204440.11520501663637304No Hit
CATGGTTA195860.11037005751516349No Hit
CACGCTTA191220.1077553476873765No Hit
CATGCTGA188890.10644235762299209No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)