FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005486543

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486543
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19680284
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCAATTC1898489896.46658554317611No Hit
NGCAATTC1513010.7687947999124403No Hit
AGCAATTA470650.2391479716451246No Hit
AGCAGTTC444820.22602316104787917No Hit
AGCACTTC433220.22012893716371165No Hit
AGCAAGTC388900.19760893694420265No Hit
GGCAATTC310230.15763492030907686No Hit
AGCAATGC290060.14738608446910623No Hit
CGCAATTC278790.1416595410919883No Hit
AGCGATTC266070.13519621972934945No Hit
AGGAATTC245580.12478478460981558No Hit
AGCAATTT229580.1166548206316535No Hit
AGCCATTC218330.11093843970950827No Hit
AGCATTTC214660.10907362922201733No Hit
AGCAATTG213510.10848928806108692No Hit
AGCAACTC201790.10253408944708318No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)