FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486553

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486553
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19234779
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGATCTA1853017296.3368074049616No Hit
NGGATCTA1485400.7722469803266261No Hit
AGGGTCTA551420.286678625213214No Hit
AGGAGCTA513640.26703712062405294No Hit
AGGATGTA405470.21080044642051773No Hit
GGGATCTA362790.18861147299898792No Hit
AGGCTCTA351690.18284067625627515No Hit
CGGATCTA327440.1702333049940423No Hit
AGGATCTC313110.16278325838835994No Hit
AGGTTCTA272590.14171725081946615No Hit
AGGATCTG239870.12470639771842452No Hit
TGGATCTA224240.11658049203476682No Hit
AGGATCAA202500.10527804868462487No Hit
AGGAACTA197690.10277737009611601No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)