FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486564

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486564
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18847507
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGATCTA1803333095.68018730540861No Hit
NGGATCTA1956351.0379887377147545No Hit
AGGAGCTA667660.3542431367713512No Hit
AGGATCTG452530.24010071995198093No Hit
ANGATCTA407430.21617182580168295No Hit
GGGATCTA402920.21377893638665318No Hit
AGGGTCTA374540.19872124201890468No Hit
AGGATCTC354150.18790283510705155No Hit
AGGCTCTA329600.17487723973255456No Hit
AGGATGTA325120.17250026754201497No Hit
CGGATCTA320020.1697943393786775No Hit
TGGATCTA276690.14680456147330254No Hit
AGGATCTT271240.14391293235757918No Hit
AGGTTCTA265270.14074540468402533No Hit
AGGAACTA254220.13488256033012747No Hit
AGGACCTA202150.10725556435660165No Hit
AGGATCAA196950.1044965787782968No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)