FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005486565

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486565
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17757414
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATGCTTA1718184096.75868344343382No Hit
NATGCTTA1791391.0088124318101723No Hit
CATGCTAA406980.22918877714964578No Hit
CATGCGTA363890.20492285644745345No Hit
CAGGCTTA253720.1428811650164827No Hit
TATGCTTA234510.13206314838410593No Hit
CCTGCTTA225940.12723699520662185No Hit
CATGCTTC200590.1129612678963277No Hit
CGTGCTTA195070.10985270715657133No Hit
CNTGCTTA194420.10948666286656379No Hit
GATGCTTA189250.10657520289834996No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)