FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005486568

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486568
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17879934
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATGCTTA1724426996.4448134987523No Hit
NATGCTTA2042971.1426048888099922No Hit
CATGCTAA408550.2284963691700428No Hit
CATGCGTA322110.1801516717008016No Hit
CATGGTTA295980.1655375237962288No Hit
CNTGCTTA295080.16503416623349954No Hit
CAGGCTTA260730.14582268592266615No Hit
TATGCTTA219780.1229199168184849No Hit
CCTGCTTA209690.11727671925410911No Hit
CGTGCTTA203930.11405523085264185No Hit
CATGCTTC201470.11267938684784853No Hit
GATGCTTA192590.10771292556225319No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)