FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486569

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486569
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18859435
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGATCTA1813510196.15930169700205No Hit
NGGATCTA1901641.0083228898426702No Hit
AGGATGTA548230.29069269572497797No Hit
AGGAGCTA546990.2900351998880136No Hit
AGGGTCTA368270.19527096119263382No Hit
AGGCTCTA317690.16845149390742617No Hit
AGGATCTC293700.15573107041647855No Hit
CGGATCTA260520.13813775439189988No Hit
GGGATCTA259710.13770826114356025No Hit
AGGTTCTA258910.1372840702810026No Hit
TGGATCTA213130.11300974817114087No Hit
AGGATCAA213030.11295672431332117No Hit
AGGAACTA211380.112081830659296No Hit
AGGATCTT199490.10577729396453288No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)