FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005486574

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486574
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16775467
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCGCTGA1620484796.59848515692589No Hit
NTCGCTGA1909771.1384303042055401No Hit
TTCGCTAA323300.19272190753318522No Hit
TTCGCTGC319980.19074282701041945No Hit
TTCGGTGA281870.16802512859999666No Hit
TNCGCTGA279200.1664335186615073No Hit
TTCGCTGG268660.16015053411031718No Hit
GTCGCTGA267550.15948885357409126No Hit
TTCGCGGA231280.13786799497146637No Hit
TTCGCTTA183770.10954687580381518No Hit
TTCGCTGT174350.10393153287476288No Hit
TTGGCTGA169140.1008258071146395No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)