FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486575

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486575
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19941517
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATCCT1929917296.778855891455No Hit
NACATCCT1488280.74632235852468No Hit
CACATCCA817640.4100189569329154No Hit
CACATCCG422700.2119698315830235No Hit
CCCATCCT353130.17708281671850742No Hit
CACAGCCT335940.16846260994085857No Hit
CACATGCT291890.14637301665665656No Hit
CGCATCCT283560.14219580185399133No Hit
CACATCCC253010.12687600446846647No Hit
CACCTCCT211860.10624066363657289No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)