FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486582

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486582
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20007619
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATCCT1927109996.31880235224392No Hit
NACATCCT1906590.9529319805620049No Hit
CACATCCA674620.33718155068826533No Hit
CACAGCCT391560.19570544601034234No Hit
CCCATCCT382620.19123714820839No Hit
GACATCCT315680.15777989374947612No Hit
CACATGCT294670.14727889410529058No Hit
AACATCCT285990.14294054679869703No Hit
CGCATCCT284370.14213085525069225No Hit
TACATCCT282780.14133615799061347No Hit
CACGTCCT263700.1317997908696682No Hit
CACCTCCT234100.11700542678266715No Hit
CACATCCG223800.1118573879280688No Hit
CAGATCCT203650.10178622453776234No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)