FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486583

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486583
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20537346
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATCCT1977949696.30989320625946No Hit
NACATCCT1574400.7666034355169359No Hit
CACATCCA790330.38482577057425044No Hit
CGCATCCT458910.22345146252100928No Hit
CACAGCCT443730.2160600498233803No Hit
CCCATCCT389050.18943538274127533No Hit
CACATGCT367970.17917115483178792No Hit
CACGTCCT316330.15402671796053882No Hit
GACATCCT306810.14939126019496385No Hit
CACATCCG285830.13917572406872825No Hit
AACATCCT259060.12614093369221127No Hit
TACATCCT245880.11972335665961902No Hit
CACCTCCT243260.11844763193842087No Hit
CAGATCCT215850.1051012141490921No Hit
CACATCCC214190.10429293054711158No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)