FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486585

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486585
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19598502
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AACTTGAC1900572496.97539128245619No Hit
NACTTGAC1959780.9999641809358695No Hit
CACTTGAC351580.17939126163826194No Hit
GACTTGAC337220.1720641710269489No Hit
AACTTGCC311190.15878254368624703No Hit
AGCTTGAC282930.14436307427986078No Hit
TACTTGAC281880.1438273190471394No Hit
ACCTTGAC236050.1204428787465491No Hit
AACTTGGC231380.11806004356863602No Hit
ANCTTGAC215930.11017678800145031No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)