FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486598

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486598
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19113365
Sequences flagged as poor quality0
Sequence length151
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGACGCT26850.0102.59846
ACGACGC28000.099.4201665
CACGACG29000.095.991894
GACGCTC40900.068.417917
TACACGA43950.064.250492
CTACACG47150.060.191331
ACGCTCT47350.058.9443248
ACACGAC50900.054.972833
CGCTCTT62150.045.376069
CGTTGAG26805.529728E-106.8232161
CGTAGAG27157.403287E-106.73525521
GTTCCGA52050.06.12820435
GTACGGG15600.00104412746.09540561
CGCATAG18552.12968E-45.91467951
TCTTCCG110550.05.902051410-14
TAACCCT811750.05.56374266
ACGGGAG43854.5474735E-115.5046311
CGTTGGG34652.7463102E-85.48850441
CTAACCC862950.05.42685465
AACCCTA870200.05.4215631
Produced by FastQC (version 0.11.5)