FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486601

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486601
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20530768
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGCGA1992107397.03033515356074No Hit
NATAGCGA1536660.7484668863824285No Hit
CATAGCGG545530.2657133917250441No Hit
CATAGCGC488560.23796479508219076No Hit
CATAGCGT333080.16223455449888674No Hit
CATCGCGA262510.12786175363727262No Hit
CAGAGCGA251320.12241139737198335No Hit
CATAGCAA236600.11524167045285398No Hit
CCTAGCGA225230.10970364089643407No Hit
CGTAGCGA225180.10967928720445334No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)