FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005486602

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486602
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19498627
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AACTTGAC1894357697.15338418443514No Hit
NACTTGAC1474660.7562891479487248No Hit
AACTTGAG385740.19782931382809674No Hit
CACTTGAC321440.16485263295718205No Hit
AACTTGAA318860.16352946286936No Hit
AACTTGCC311970.15999588073560256No Hit
AGCTTGAC292970.15025160489505235No Hit
GACTTGAC290600.1490361346980995No Hit
AACTTGGC249590.12800388458120668No Hit
TACTTGAC243680.12497290193817237No Hit
ACCTTGAC217600.11159760120545924No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)