FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005486603

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486603
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20638547
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGCGA1999413196.87760964955527No Hit
NATAGCGA2059810.9980402205639767No Hit
CATAGCGC397990.19283818768830963No Hit
CATAGCGG307910.1491917042415825No Hit
CATAGCGT261860.12687908698223765No Hit
CATCGCGA242340.11742105682149039No Hit
CATAGCAA239030.11581726174812598No Hit
CAGAGCGA235770.11423769318644379No Hit
CCTAGCGA234740.1137386270457896No Hit
TATAGCGA233560.1131668813700887No Hit
CNTAGCGA225910.10946022508270567No Hit
CGTAGCGA208850.10119413929672472No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)