FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486606

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486606
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16634384
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCGCTGA1605592796.52252226472588No Hit
NTCGCTGA1689071.0154088062413371No Hit
TTCGCGGA456540.27445560953744963No Hit
TTCGCTAA330530.19870287952953353No Hit
TTCGCTGC328030.19719996845089066No Hit
TTCGCTGG301570.18129315759453432No Hit
TTGGCTGA276920.16647445435911545No Hit
GTCGCTGA257210.1546255034150949No Hit
TTCGCTTA206550.12417051331747543No Hit
TTTGCTGA205090.12329281324754797No Hit
TTCGCTGT193550.1163553757085324No Hit
TTCGGTGA182810.10989886971468255No Hit
TTCGCCGA180430.10846809836781451No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)